nirs.modules.default_modules.image_recon

See also nirs.modules.default_modules.basic_processing,
nirs.modules.default_modules.FIR_model,
nirs.modules.default_modules.group_analysis,
nirs.modules.default_modules.image_recon,
nirs.modules.default_modules.single_subject_dOD, and
nirs.modules.default_modules.single_subject.

Untitled

nirs.modules.default_modules.image_recon

This module runs a default modules (basic processing) to get image reconstruction result. It is noted that the raw data must have a Probe1020 object.
The following modules are included in this default: nirs.modules.RemoveStimLess, nirs.modules.FixNaNs, nirs.modules.Resample, nirs.modules.OpticalDensity, and nirs.modules.TrimBaseLine, nirs.modules.GLM, and nirs.modules.ImageRecondMFX.
Example Usage:
raw = nirs.testing.simData_registered();
 
job = nirs.modules.default_modules.image_recon;
ImageStats = job.run(raw);
Import data module skipped: Data provided dOD created in workspace …….Finished 1 of 1. SubjStats created in workspace ReML Iteration: 7 …6.642106e-05 ImageStats created in workspace
 
ImageStats.draw
ans = 1×2
12.0012 13.0012
 
References
[1] Abdelnour F, Schmidt B, Huppert TJ. Topographic localization of brain activation in diffuse optical imaging using spherical wavelets. Phys Med Biol. 2009 Oct 21;54(20):6383-413. doi: 10.1088/0031-9155/54/20/023. Epub 2009 Oct 7. PMID: 19809125; PMCID: PMC2806654. https://pubmed.ncbi.nlm.nih.gov/19809125/
[2] Abdelnour F, Huppert T. A random-effects model for group-level analysis of diffuse optical brain imaging. Biomed Opt Express. 2010 Nov 30;2(1):1-25. doi: 10.1364/BOE.2.000001. PMID: 21326631; PMCID: PMC3028484. https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3028484/
[3] Abdelnour F, Genovese C, Huppert T. Hierarchical Bayesian regularization of reconstructions for diffuse optical tomography using multiple priors. Biomed Opt Express. 2010 Oct 6;1(4):1084-1103. doi: 10.1364/BOE.1.001084. PMID: 21258532; PMCID: PMC3018091. https://pubmed.ncbi.nlm.nih.gov/21258532/